# 安装包
if (!requireNamespace("tidyverse", quietly = TRUE)) {
install.packages("tidyverse")
}if (!requireNamespace("ggthemes", quietly = TRUE)) {
install.packages("ggthemes")
}
# 加载包
library(tidyverse)
library(ggthemes)
甘特图
甘特图是一种用来说明项目进度条形图。
环境配置
系统: Cross-platform (Linux/MacOS/Windows)
编程语言: R
依赖包:
tidyverse
;ggthemes
数据准备
载入数据为 4 个样本即四位患者,3 个项目即 3 种治疗方法,以及每种治疗方法的起止时间。
# 加载数据
<- read.delim("files/Hiplot/059-gantt-data.txt", header = T)
data
# 整理数据格式
<- colnames(data)[1]
usr_ylab if (!is.numeric(data[, 2])) {
2] <- factor(data[, 2], levels = unique(data[, 2]))
data[,
}<- gather(data, "state", "date", 3:4)
data_gather <- levels(data_gather$sample)
sample $sample <- factor(data_gather$sample,
data_gatherlevels = rev(unique(data_gather$sample))
)
# 查看数据
head(data_gather)
sample item state date
1 patient1 treat1 start 1
2 patient2 treat1 start 2
3 patient2 treat2 start 5
4 patient2 treat3 start 7
5 patient3 treat3 start 6
6 patient3 treat1 start 3
可视化
# 甘特图
<- ggplot(data_gather, aes(date, sample, color = item)) +
p geom_line(size = 10, alpha = 1) +
labs(x = "Time", y = "sample", title = "Gantt Plot") +
theme(axis.ticks = element_blank()) +
scale_color_manual(values = c("#e04d39","#5bbad6","#1e9f86")) +
theme_stata() +
theme(text = element_text(family = "Arial"),
plot.title = element_text(size = 12,hjust = 0.5),
axis.title = element_text(size = 12),
axis.text = element_text(size = 10),
axis.text.x = element_text(angle = 0, hjust = 0.5, vjust = 1),
legend.position = "right",
legend.direction = "vertical",
legend.title = element_text(size = 10),
legend.text = element_text(size = 10))
p

横轴表示时间进度,纵轴表示 4 位患者,3 种颜色表示 3 种治疗方法,该图可以观测到每位患者不同治疗方法使用的时间进度。