GGPubr Boxplot

Authors

[Editor] Hu Zheng;

[Contributors]

Note

Hiplot website

This page is the tutorial for source code version of the Hiplot GGPubr Boxplot plugin. You can also use the Hiplot website to achieve no code ploting. For more information please see the following link:

https://hiplot.cn/basic/ggpubr-boxplot?lang=en

Feature-rich boxplot (GGPubr interface).

Setup

System Requirements: Cross-platform (Linux/MacOS/Windows)
Programming language: R
Dependent packages: ggpubr; ggthemes

# Install packages
if (!requireNamespace("ggpubr", quietly = TRUE)) {
  install.packages("ggpubr")
}
if (!requireNamespace("ggthemes", quietly = TRUE)) {
  install.packages("ggthemes")
}

# Load packages
library(ggpubr)
library(ggthemes)

Data Preparation

# Load data
data <- read.delim("files/Hiplot/072-ggpubr-boxplot-data.txt", header = T)

# View data
head(data)

   len supp dose
1  4.2   VC  0.5
2 11.5   VC  0.5
3  7.3   VC  0.5
4  5.8   VC  0.5
5  6.4   VC  0.5
6 10.0   VC  0.5

Visualization

# GGPubr Boxplot
p <- ggboxplot(
  data = data, x = "supp", y = "len", facet.by = "dose",
  merge = T,
  color = "supp",
  fill = "white") + 
  stat_compare_means(
    label = "p.signif",
    label.x.npc = "center",
    method = "wilcox") + 
  scale_y_continuous(expand = expansion(mult = c(0.2, 0.2))) +
  scale_fill_manual(values = c("#e04d39","#5bbad6")) +
  ggtitle("Complex Boxplot") + 
  theme_stata() +
  theme(text = element_text(family = "Arial"),
        plot.title = element_text(size = 12,hjust = 0.5),
        axis.title = element_text(size = 12),
        axis.text = element_text(size = 10),
        axis.text.x = element_text(angle = 0, hjust = 0.5,vjust = 1),
        legend.position = "right",
        legend.direction = "vertical",
        legend.title = element_text(size = 10),
        legend.text = element_text(size = 10))

p